Leishmania major

Downloads

Here you can find the genomic and transcriptomic data derived from our research.




Based on L. major genome version 9 (TrytripDB)

LmjF v9 transcriptome	Download GTF	Complete transcriptome assembly based on RNA-seq from L.major axenic promastigotes. A detail description can be found in our paper (Rastrojo et al. 2013).
LmjF v9 SIDER2	Download GTF	A detailed catalogue of all SIDER2 elements found in the L.major genome (main paper Requena et al. 2016 and dataset Requena et al. 2017).





Based on the updated L. major genome (Alonso et al. 2016)

LmjF cbm v1	Download GENOME	Updated L.major genome sequence revealling 7 new lost locus.
LmjF cbm v1 CDS	Download GFF	Updated L.major CDS annotation
LmjF cbm v1 transcriptome	Download GTF	Updated version of the complete transcriptome of L.major
LmjF cbm v1.2 CDS	Download GFF	Updated L.major CDS annotation NEW version (24/10/2017)
LmjF cbm v1.2 transcriptome	Download GTF	Updated version of the complete transcriptome of L.major NEW version (24/10/2017)
LmjF cbm transcripts	Download TRANSCRIPTS	Fasta file with L.major transcripts

Transcriptome Browser

Here you can access a L. major transcriptome Browser based on Alonso et al. 2016 version of the genome. This tool allows to search for different fields dynamically (transcript, gene, protein function...) in order to look for specific information. It also provides a link for each transcript where you can obtain the transcript sequence with the coding region in uppercase.

Go to the BROWSER