About us

    Our laboratory focuses on the molecular genetics of parasites of the genus Leishmania, causative agents of leishmaniasis. In the last years, we have incorporated next generation sequencing techniques for addressing issues of gene expression and genomic plasticity in this protist. This WEB server was created as a means to sharing the data that we are generating with people having interests for these topics. We are working at the Centro de Biologia Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid (Spain).

Downloads

Here you can find the genomic and transcriptomic data derived from our research.

Based on L. major genome version 9 from TrytripDB

• LmjF_v9_transcriptome: complete transcriptome assembly based on RNA-seq from L.major axenic promastigotes. A detail description can be found in our paper from 2013 (Rastrojo et al. 2013).
• LmjF_v9_SIDER2: a detailed catalogue of all SIDER2 elements found in the L.major genome (main paper Requena et al. 2016 and dataset Requena et al. 2017).

Based on the updated L. major genome (Alonso et al. 2016).

• LmjF_cbm_v1: updated L.major genome sequence revealling 7 new lost locus (Alonso et al. 2016).
• LmjF_cbm_v1_CDS: updated L.major CDS annotation (Alonso et al. 2016).
• LmjF_cbm_v1_transcriptome: updated version of the complete transcriptome of L.major. (Alonso et al. 2016).

L. major transcriptome Browser

Here you can access a L. major transcriptome Browser based on Alonso et al. 2016 version of the genome, where you can look for specific gene and transcript information.

• Go to the Browser.

References