Downloads
Here you can find the genomic and transcriptomic data derived from our research.
GENOMIC DATA
File |
Reference genome |
Version |
Downloads |
Notes |
|---|---|---|---|---|
| GENOME (fasta file) | Alonso et al. 2016 (CBMSO) | - |
|
Updated L.major genome sequence revealing 7 new loci |
| CDS annotation file (GFF) | Alonso et al. 2016 (CBMSO) | v1 |
|
L.major CDS annotation |
| CDS annotation file (GFF) | Alonso et al. 2016 (CBMSO) | v1.2 |
|
Updated L.major CDS annotation, with some minor changes in coordenates affecting some CDSs.NEW version (24/10/2017) |
TRANSCRIPTOMIC DATA
File |
Reference genome |
Version |
Downloads |
Notes |
|---|---|---|---|---|
| TRANSCRIPTOME annotation file (GTF) | TriTrypDB release 9 Friedlin strain | - |
|
Complete transcriptome assembly based on RNA-seq from L.major axenic promastigotes. A detail description can be found in our paper (Rastrojo et al. 2013) |
| TRANSCRIPTOME annotation file (GTF) | Alonso et al. 2016 (CBMSO) | v1 |
|
Complete transcriptome of L.major |
| TRANSCRIPTOME annotation file (GTF) | Alonso et al. 2016 (CBMSO) | v1.2 |
|
Updated version of the complete transcriptome of L.major with some minor changes in coordenates affecting some transcripts.NEW version (24/10/2017) |
| TRANSCRIPTS (fasta file) | Alonso et al. 2016 (CBMSO) | - |
|
Fasta file with L.major transcripts extracted from the transcriptome annotation file v1.2 (CBMSO) |
SIDER2 ELEMENTS
File |
Reference genome |
Version |
Downloads |
Notes |
|---|---|---|---|---|
| SIDER2 annotation file (GTF) | TriTrypDB release 9 Friedlin strain | - |
|
A detailed catalogue of all SIDER2 elements found in the L.major genome (main paper Requena et al. 2016 and dataset Requena et al. 2017) |